Removes 1 stat RPC per remove operation

Ramon Nou authored Nov 05, 2020 and Ramon Nou committed Dec 07, 2020

Added dirents_extended to get directory entries of a dir and a single server, added find proposal for io500, added tests

Client now reads host file to determine auto_sm and RPC protocol

gkfs::hg_tag -> gkfs::rpc::tag
gkfs::utils -> gkfs::util
gkfs::client -> gkfs::util
gkfs::logging -> gkfs::log

Restructuring code w.r.t. configurations and definitions:
- #defines have been mostly removed from configurations
- a dedicated config file has been added for configurations with constexpr
- past configure file is now only a cmake wrapper
- wrapping global functions into namespaces

Removed all adafs and ifs occurrences. Now called gkfs

The access RPC have been removed. The POSIX access functionality now is implemented through the stat RPC. This makes code easier to maintain and modify.

There would be a little performance degradation on the POSIX access
function because we are now retrieving also the metadata
associated to the file.

This change makes a lot easier to add symlink support

 - improved statfs system call
 - intercepted statvfs library call

Both of the above function now report the aggregated real size
of all the data-nodes.

You can test this with `df "/tmp/gekkofs_mountpoint"` command

Since now there is only one margo instance there is no more difference
between RPC and IPC.

All the "ipc" occurence in the code have been removed in favor of "rpc"

Implemented all the logic to handle truncate operation.

Test: added truncate test

Support for the following calls has been added:
 - opendir
 - readdir
 - closedir

The readdir call use the new RPC get_dirents that ask to all the
nodes (broadcast) about all the existing first-level entries
of a specific directory.

- Previously the directory hierarchy was not clear regarding to which
  file belong to which part of the project (client or daemon).
  Further, we will have other clients in the future (such as Fuse).
- CMake files now differentiate between include dirs for all targets
  and target specific ones.
- Removed duplicate -pg flag.
- Not listing header files when adding executables or libraries
  is considered bad practice. Note that include_directories() is adding
  include paths to the code while adding all files used for executables
  and libraries provide the context which files belong to each binary.
  When only include_directories() is set, CMake assumes that all files
  belong to a binary (which is not necessarily true). As a result,
  some IDEs may break as the do not support this assumption.

  In general we should almost always favor explicitness over implicitness.

Added lseek64 syscall and used file flags properly

- Add: adafs_access, open with check if object exists
- Add: root metadentry to database of each node
- Modified: Open, unlink, mkdir, rmdir and combined their functionality to "create node" and "remove node"