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################################################################################
# Copyright 2018-2020, Barcelona Supercomputing Center (BSC), Spain #
# Copyright 2015-2020, Johannes Gutenberg Universitaet Mainz, Germany #
# #
# This software was partially supported by the #
# EC H2020 funded project NEXTGenIO (Project ID: 671951, www.nextgenio.eu). #
# #
# This software was partially supported by the #
# ADA-FS project under the SPPEXA project funded by the DFG. #
# #
# SPDX-License-Identifier: MIT #
################################################################################
import os, sh, sys, re, pytest, signal
import random, socket, netifaces
from pathlib import Path
from itertools import islice
from time import perf_counter
from pprint import pformat
from harness.logger import logger
from harness.io import IOParser
from harness.cmd import CommandParser
### some definitions required to interface with the client/daemon
gkfs_daemon_cmd = 'gkfs_daemon'
gkfs_client_cmd = 'gkfs.io'
gkfs_client_lib_file = 'libgkfs_intercept.so'
gkfs_hosts_file = 'gkfs_hosts.txt'
gkfs_forwarding_map_file = 'gkfs_forwarding.map'
gkfs_daemon_log_file = 'gkfs_daemon.log'
gkfs_daemon_log_level = '100'
gkfs_client_log_file = 'gkfs_client.log'
gkfs_client_log_level = 'all'
gkfs_daemon_active_log_pattern = r'Startup successful. Daemon is ready.'
def get_ip_addr(iface):
return netifaces.ifaddresses(iface)[netifaces.AF_INET][0]['addr']
def get_ephemeral_host():
"""
Returns a random IP in the 127.0.0.0/24. This decreases the likelihood of
races for ports by 255^3.
"""
res = '127.{}.{}.{}'.format(random.randrange(1, 255),
random.randrange(1, 255),
random.randrange(2, 255),)
return res
def get_ephemeral_port(port=0, host=None):
"""
Get an ephemeral socket at random from the kernel.
Parameters
----------
port: `str`
If specified, use this port as a base and the next free port after that
base will be returned.
host: `str`
If specified, use this host. Otherwise it will use a temporary IP in
the 127.0.0.0/24 range
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Returns
-------
Available port to use
"""
if host is None:
host = get_ephemeral_host()
# Dynamic port-range:
# * cat /proc/sys/net/ipv4/ip_local_port_range
# 32768 61000
if port == 0:
port = random.randrange(1024, 32768)
while True:
s = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
try:
s.setsockopt(socket.SOL_SOCKET, socket.SO_REUSEADDR, 1)
s.bind((host, port))
port = s.getsockname()[1]
s.close()
return port
except socket.error:
port = random.randrange(1024, 32768)
def get_ephemeral_address(iface):
"""
Get an ephemeral network address (IPv4:port) from an interface
and a random port.
Parameters
----------
iface: `str`
The interface that will be used to find out the IPv4 address
for the ephemeral address.
A network address formed by iface's IPv4 address and an available
randomly selected port.
"""
return f"{iface}:{get_ephemeral_port(host=get_ip_addr(iface))}"
def _process_exists(pid):
"""
Checks whether a given PID exists in the system
Parameters
----------
pid: `int`
The PID to check for
Returns
-------
True if a process with the provided `pid` exists in the system.
False Otherwise
"""
try:
sh.ps(['-h', '-p', pid])
except Exception:
# sh.raises an Exception if the command doesn't return 0
return False
return True
class Daemon:
def __init__(self, interface, workspace):
self._address = get_ephemeral_address(interface)
self._workspace = workspace
self._cmd = sh.Command(gkfs_daemon_cmd, self._workspace.bindirs)
self._env = os.environ.copy()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
'LD_LIBRARY_PATH' : libdirs,
'GKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'GKFS_DAEMON_LOG_PATH' : self.logdir / gkfs_daemon_log_file,
'GKFS_LOG_LEVEL' : gkfs_daemon_log_level,
}
self._env.update(self._patched_env)
def run(self):
args = [ '--mountdir', self.mountdir,
'--rootdir', self.rootdir,
'-l', self._address ]
logger.debug(f"spawning daemon")
logger.debug(f"cmdline: {self._cmd} " + " ".join(map(str, args)))
logger.debug(f"patched env:\n{pformat(self._patched_env)}")
self._proc = self._cmd(
args,
_env=self._env,
# _out=sys.stdout,
# _err=sys.stderr,
_bg=True,
)
logger.debug(f"daemon process spawned (PID={self._proc.pid})")
logger.debug("waiting for daemon to be ready")
try:
self.wait_until_active(self._proc.pid, 10.0)
except Exception as ex:
logger.error(f"daemon initialization failed: {ex}")
# if the daemon initialized correctly but took longer than
# `timeout`, we may be leaving running processes behind
if _process_exists(self._proc.pid):
self.shutdown()
logger.critical(f"daemon was shut down, what is ex? {ex.__repr__}?")
raise ex
logger.debug("daemon is ready")
def wait_until_active(self, pid, timeout, max_lines=50):
Waits until a GKFS daemon is active or until a certain timeout
has expired. Checks if the daemon is running by searching its
log for a pre-defined readiness message.
Parameters
----------
pid: `int`
The PID of the daemon process to wait for.
timeout: `number`
The number of seconds to wait for
max_lines: `int`
The maximum number of log lines to check for a match.
"""
gkfs_daemon_active_log_pattern = r'Startup successful. Daemon is ready.'
init_time = perf_counter()
while perf_counter() - init_time < timeout:
with open(self.logdir / gkfs_daemon_log_file) as log:
for line in islice(log, max_lines):
if re.search(gkfs_daemon_active_log_pattern, line) is not None:
except FileNotFoundError:
# Log is missing, the daemon might have crashed...
logger.debug(f"daemon log file missing, checking if daemon is alive...")
if not _process_exists(pid):
raise RuntimeError(f"process {pid} is not running")
# ... or it might just be lazy. let's give it some more time
logger.debug(f"daemon {pid} found, retrying...")
raise RuntimeError("initialization timeout exceeded")
logger.debug(f"terminating daemon")
try:
self._proc.terminate()
err = self._proc.wait()
except sh.SignalException_SIGTERM:
pass
except Exception:
raise
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@property
def cwd(self):
return self._workspace.twd
@property
def rootdir(self):
return self._workspace.rootdir
@property
def mountdir(self):
return self._workspace.mountdir
@property
def logdir(self):
return self._workspace.logdir
@property
def interface(self):
return self._interface
class _proxy_exec():
def __init__(self, client, name):
self._client = client
self._name = name
def __call__(self, *args, **kwargs):
return self._client.run(self._name, *args, **kwargs)
"""
A class to represent a GekkoFS client process with a patched LD_PRELOAD.
This class allows tests to interact with the file system using I/O-related
function calls, be them system calls (e.g. read()) or glibc I/O functions
(e.g. opendir()).
"""
def __init__(self, workspace):
self._parser = IOParser()
self._workspace = workspace
self._cmd = sh.Command(gkfs_client_cmd, self._workspace.bindirs)
self._env = os.environ.copy()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
# ensure the client interception library is available:
# to avoid running code with potentially installed libraries,
# it must be found in one (and only one) of the workspace's bindirs
preloads = []
for d in self._workspace.bindirs:
search_path = Path(d) / gkfs_client_lib_file
if search_path.exists():
preloads.append(search_path)
if len(preloads) == 0:
logger.error(f'No client libraries found in the test\'s binary directories:')
pytest.exit("Aborted due to initialization error. Check test logs.")
if len(preloads) != 1:
logger.error(f'Multiple client libraries found in the test\'s binary directories:')
for p in preloads:
logger.error(f' {p}')
logger.error(f'Make sure that only one copy of the client library is available.')
pytest.exit("Aborted due to initialization error. Check test logs.")
self._preload_library = preloads[0]
'LD_LIBRARY_PATH' : libdirs,
'LD_PRELOAD' : self._preload_library,
'LIBGKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'LIBGKFS_LOG' : gkfs_client_log_level,
'LIBGKFS_LOG_OUTPUT' : self._workspace.logdir / gkfs_client_log_file
}
self._env.update(self._patched_env)
@property
def preload_library(self):
"""
Return the preload library detected for this client
"""
return self._preload_library
logger.debug(f"running client")
logger.debug(f"cmdline: {self._cmd} " + " ".join(map(str, list(args))))
logger.debug(f"patched env: {pformat(self._patched_env)}")
out = self._cmd(
[ cmd ] + list(args),
_env = self._env,
# _out=sys.stdout,
# _err=sys.stderr,
)
logger.debug(f"command output: {out.stdout}")
return self._parser.parse(cmd, out.stdout)
def __getattr__(self, name):
return _proxy_exec(self, name)
@property
def cwd(self):
return self._workspace.twd
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class ShellCommand:
"""
A wrapper class for sh.RunningCommand that allows seamlessly using all
its methods and properties plus extending it with additional methods
for ease of use.
"""
def __init__(self, cmd, proc):
self._parser = CommandParser()
self._cmd = cmd
self._wrapped_proc = proc
@property
def parsed_stdout(self):
return self._parser.parse(self._cmd, self._wrapped_proc.stdout.decode())
@property
def parsed_stderr(self):
return self._parser.parse(self._cmd, self._wrapped_proc.stderr.decode())
def __getattr__(self, attr):
if attr in self.__dict__:
return getattr(self, attr)
return getattr(self._wrapped_proc, attr)
class ShellClient:
"""
A class to represent a GekkoFS shell client process.
This class allows tests to execute shell commands or scripts via bash -c
on a GekkoFS instance.
"""
def __init__(self, workspace):
self._workspace = workspace
self._cmd = sh.Command("bash")
self._env = os.environ.copy()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
# ensure the client interception library is available:
# to avoid running code with potentially installed libraries,
# it must be found in one (and only one) of the workspace's bindirs
preloads = []
for d in self._workspace.bindirs:
search_path = Path(d) / gkfs_client_lib_file
if search_path.exists():
preloads.append(search_path)
if len(preloads) != 1:
logger.error(f'Multiple client libraries found in the test\'s binary directories:')
for p in preloads:
logger.error(f' {p}')
logger.error(f'Make sure that only one copy of the client library is available.')
pytest.exit("Aborted due to initialization error")
self._preload_library = preloads[0]
self._patched_env = {
'LD_LIBRARY_PATH' : libdirs,
'LD_PRELOAD' : self._preload_library,
'LIBGKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'LIBGKFS_LOG' : gkfs_client_log_level,
'LIBGKFS_LOG_OUTPUT' : self._workspace.logdir / gkfs_client_log_file
}
self._env.update(self._patched_env)
@property
def patched_environ(self):
"""
Return the patched environment required to run a test as a string that
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can be prepended to a shell command.
"""
return ' '.join(f'{k}="{v}"' for k,v in self._patched_env.items())
def script(self, code, intercept_shell=True, timeout=60, timeout_signal=signal.SIGKILL):
"""
Execute a shell script passed as an argument in bash.
For instance, the following snippet:
mountdir = pathlib.Path('/tmp')
file01 = 'file01'
ShellClient().script(
f'''
expected_pathname={mountdir / file01}
if [[ -e ${{expected_pathname}} ]];
then
exit 0
fi
exit 1
''')
transforms into:
bash -c '
expected_pathname=/tmp/file01
if [[ -e ${expected_pathname} ]];
then
exit 0
fi
exit 1
'
Note that since we are using Python's f-strings, for variable
expansions to work correctly, they need to be defined with double
braces, e.g. ${{expected_pathname}}.
Parameters
----------
code: `str`
The script code to be passed to 'bash -c'.
intercept_shell: `bool`
Controls whether the shell executing the script should be
executed with LD_PRELOAD=libgkfs_intercept.so (default: True).
timeout: `int`
How much time, in seconds, we should give the process to complete.
If the process does not finish within the timeout, it will be sent
the signal defined by `timeout_signal`.
Default value: 60
timeout_signal: `int`
The signal to be sent to the process if `timeout` is not None.
Default value: signal.SIGKILL
Returns
-------
A sh.RunningCommand instance that allows interacting with
the finished process.
"""
logger.debug(f"running bash")
logger.debug(f"cmd: bash -c '{code}'")
logger.debug(f"timeout: {timeout} seconds")
logger.debug(f"timeout_signal: {signal.Signals(timeout_signal).name}")
if intercept_shell:
logger.debug(f"patched env: {self._patched_env}")
# 'sh' raises an exception if the return code is not zero;
# since we'd rather check for return codes explictly, we
# whitelist all exit codes from 1 to 255 as 'ok' using the
# _ok_code argument
return self._cmd('-c',
code,
_env = (self._env if intercept_shell else os.environ),
# _out=sys.stdout,
# _err=sys.stderr,
_timeout=timeout,
_timeout_signal=timeout_signal,
# _ok_code=list(range(0, 256))
)
def run(self, cmd, *args, timeout=60, timeout_signal=signal.SIGKILL):
"""
Execute a shell command with arguments.
For example, the following snippet:
mountdir = pathlib.Path('/tmp')
file01 = 'file01'
ShellClient().stat('--terse', mountdir / file01)
transforms into:
bash -c 'stat --terse /tmp/file01'
Parameters:
-----------
cmd: `str`
The command to execute.
args: `list`
The list of arguments for the command.
timeout: `number`
How much time, in seconds, we should give the process to complete.
If the process does not finish within the timeout, it will be sent
the signal defined by `timeout_signal`.
Default value: 60
timeout_signal: `int`
The signal to be sent to the process if `timeout` is not None.
Default value: signal.SIGKILL
Returns
-------
A ShellCommand instance that allows interacting with the finished
process. Note that ShellCommand wraps sh.RunningCommand and adds s
extra properties to it.
"""
bash_c_args = f"{cmd} {' '.join(str(a) for a in args)}"
logger.debug(f"running bash")
logger.debug(f"cmd: bash -c '{bash_c_args}'")
logger.debug(f"timeout: {timeout} seconds")
logger.debug(f"timeout_signal: {signal.Signals(timeout_signal).name}")
logger.debug(f"patched env:\n{pformat(self._patched_env)}")
# 'sh' raises an exception if the return code is not zero;
# since we'd rather check for return codes explictly, we
# whitelist all exit codes from 1 to 255 as 'ok' using the
# _ok_code argument
proc = self._cmd('-c',
bash_c_args,
_env = self._env,
# _out=sys.stdout,
# _err=sys.stderr,
_timeout=timeout,
_timeout_signal=timeout_signal,
# _ok_code=list(range(0, 256))
)
return ShellCommand(cmd, proc)
def __getattr__(self, name):
return _proxy_exec(self, name)
@property
def cwd(self):
return self._workspace.twd
class FwdDaemon:
def __init__(self, interface, workspace):
self._address = get_ephemeral_address(interface)
self._workspace = workspace
self._cmd = sh.Command(gkfs_daemon_cmd, self._workspace.bindirs)
self._env = os.environ.copy()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
self._patched_env = {
'LD_LIBRARY_PATH' : libdirs,
'GKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'GKFS_DAEMON_LOG_PATH' : self.logdir / gkfs_daemon_log_file,
'GKFS_LOG_LEVEL' : gkfs_daemon_log_level
}
self._env.update(self._patched_env)
def run(self):
args = [ '--mountdir', self.mountdir,
'--rootdir', self.rootdir,
'-l', self._address ]
logger.debug(f"spawning daemon")
logger.debug(f"cmdline: {self._cmd} " + " ".join(map(str, args)))
logger.debug(f"patched env:\n{pformat(self._patched_env)}")
self._proc = self._cmd(
args,
_env=self._env,
# _out=sys.stdout,
# _err=sys.stderr,
_bg=True,
)
logger.debug(f"daemon process spawned (PID={self._proc.pid})")
logger.debug("waiting for daemon to be ready")
try:
self.wait_until_active(self._proc.pid, 10.0)
except Exception as ex:
logger.error(f"daemon initialization failed: {ex}")
# if the daemon initialized correctly but took longer than
# `timeout`, we may be leaving running processes behind
if _process_exists(self._proc.pid):
self.shutdown()
logger.critical(f"daemon was shut down, what is ex? {ex.__repr__}?")
raise ex
logger.debug("daemon is ready")
return self
def wait_until_active(self, pid, timeout, max_lines=50):
"""
Waits until a GKFS daemon is active or until a certain timeout
has expired. Checks if the daemon is running by searching its
log for a pre-defined readiness message.
Parameters
----------
pid: `int`
The PID of the daemon process to wait for.
timeout: `number`
The number of seconds to wait for
max_lines: `int`
The maximum number of log lines to check for a match.
"""
gkfs_daemon_active_log_pattern = r'Startup successful. Daemon is ready.'
init_time = perf_counter()
while perf_counter() - init_time < timeout:
try:
logger.debug(f"checking log file")
with open(self.logdir / gkfs_daemon_log_file) as log:
for line in islice(log, max_lines):
if re.search(gkfs_daemon_active_log_pattern, line) is not None:
return
except FileNotFoundError:
# Log is missing, the daemon might have crashed...
logger.debug(f"daemon log file missing, checking if daemon is alive...")
pid=self._proc.pid
if not _process_exists(pid):
raise RuntimeError(f"process {pid} is not running")
# ... or it might just be lazy. let's give it some more time
logger.debug(f"daemon {pid} found, retrying...")
raise RuntimeError("initialization timeout exceeded")
def shutdown(self):
logger.debug(f"terminating daemon")
try:
self._proc.terminate()
err = self._proc.wait()
except sh.SignalException_SIGTERM:
pass
except Exception:
raise
@property
def cwd(self):
return self._workspace.twd
@property
def rootdir(self):
return self._workspace.rootdir
@property
def mountdir(self):
return self._workspace.mountdir
@property
def logdir(self):
return self._workspace.logdir
@property
def interface(self):
return self._interface
class FwdClient:
"""
A class to represent a GekkoFS client process with a patched LD_PRELOAD.
This class allows tests to interact with the file system using I/O-related
function calls, be them system calls (e.g. read()) or glibc I/O functions
(e.g. opendir()).
"""
def __init__(self, workspace):
self._parser = IOParser()
self._workspace = workspace
self._cmd = sh.Command(gkfs_client_cmd, self._workspace.bindirs)
self._env = os.environ.copy()
# create the forwarding map file
fwd_map_file = open(self.cwd / gkfs_forwarding_map_file, 'w')
fwd_map_file.write('{} {}\n'.format(socket.gethostname(), 0))
fwd_map_file.close()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
# ensure the client interception library is available:
# to avoid running code with potentially installed libraries,
# it must be found in one (and only one) of the workspace's bindirs
preloads = []
for d in self._workspace.bindirs:
search_path = Path(d) / gkfs_client_lib_file
if search_path.exists():
preloads.append(search_path)
if len(preloads) == 0:
logger.error(f'No client libraries found in the test\'s binary directories:')
pytest.exit("Aborted due to initialization error. Check test logs.")
if len(preloads) != 1:
logger.error(f'Multiple client libraries found in the test\'s binary directories:')
for p in preloads:
logger.error(f' {p}')
logger.error(f'Make sure that only one copy of the client library is available.')
pytest.exit("Aborted due to initialization error. Check test logs.")
self._preload_library = preloads[0]
self._patched_env = {
'LD_LIBRARY_PATH' : libdirs,
'LD_PRELOAD' : self._preload_library,
'LIBGKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'LIBGKFS_FORWARDING_MAP_FILE' : self.cwd / gkfs_forwarding_map_file,
'LIBGKFS_LOG' : gkfs_client_log_level,
'LIBGKFS_LOG_OUTPUT' : self._workspace.logdir / gkfs_client_log_file
}
self._env.update(self._patched_env)
@property
def preload_library(self):
"""
Return the preload library detected for this client
"""
return self._preload_library
def run(self, cmd, *args):
logger.debug(f"running client")
logger.debug(f"cmdline: {self._cmd} " + " ".join(map(str, list(args))))
logger.debug(f"patched env: {pformat(self._patched_env)}")
out = self._cmd(
[ cmd ] + list(args),
_env = self._env,
# _out=sys.stdout,
# _err=sys.stderr,
)
logger.debug(f"command output: {out.stdout}")
return self._parser.parse(cmd, out.stdout)
def __getattr__(self, name):
return _proxy_exec(self, name)
@property
def cwd(self):
return self._workspace.twd
class ShellFwdClient:
"""
A class to represent a GekkoFS shell client process.
This class allows tests to execute shell commands or scripts via bash -c
on a GekkoFS instance.
"""
def __init__(self, workspace):
self._workspace = workspace
self._cmd = sh.Command("bash")
self._env = os.environ.copy()
# create the forwarding map file
fwd_map_file = open(self.cwd / gkfs_forwarding_map_file, 'w')
fwd_map_file.write('{} {}\n'.format(socket.gethostname(), 0))
fwd_map_file.close()
libdirs = ':'.join(
filter(None, [os.environ.get('LD_LIBRARY_PATH', '')] +
[str(p) for p in self._workspace.libdirs]))
# ensure the client interception library is available:
# to avoid running code with potentially installed libraries,
# it must be found in one (and only one) of the workspace's bindirs
preloads = []
for d in self._workspace.bindirs:
search_path = Path(d) / gkfs_client_lib_file
if search_path.exists():
preloads.append(search_path)
if len(preloads) != 1:
logger.error(f'Multiple client libraries found in the test\'s binary directories:')
for p in preloads:
logger.error(f' {p}')
logger.error(f'Make sure that only one copy of the client library is available.')
pytest.exit("Aborted due to initialization error")
self._preload_library = preloads[0]
self._patched_env = {
'LD_LIBRARY_PATH' : libdirs,
'LD_PRELOAD' : self._preload_library,
'LIBGKFS_HOSTS_FILE' : self.cwd / gkfs_hosts_file,
'LIBGKFS_FORWARDING_MAP_FILE' : self.cwd / gkfs_forwarding_map_file,
'LIBGKFS_LOG' : gkfs_client_log_level,
'LIBGKFS_LOG_OUTPUT' : self._workspace.logdir / gkfs_client_log_file
}
self._env.update(self._patched_env)
@property
def patched_environ(self):
"""
Return the patched environment required to run a test as a string that
can be prepended to a shell command.
"""
return ' '.join(f'{k}="{v}"' for k,v in self._patched_env.items())
def script(self, code, intercept_shell=True, timeout=60, timeout_signal=signal.SIGKILL):
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"""
Execute a shell script passed as an argument in bash.
For instance, the following snippet:
mountdir = pathlib.Path('/tmp')
file01 = 'file01'
ShellClient().script(
f'''
expected_pathname={mountdir / file01}
if [[ -e ${{expected_pathname}} ]];
then
exit 0
fi
exit 1
''')
transforms into:
bash -c '
expected_pathname=/tmp/file01
if [[ -e ${expected_pathname} ]];
then
exit 0
fi
exit 1
'
Note that since we are using Python's f-strings, for variable
expansions to work correctly, they need to be defined with double
braces, e.g. ${{expected_pathname}}.
Parameters
----------
code: `str`
The script code to be passed to 'bash -c'.
intercept_shell: `bool`
Controls whether the shell executing the script should be
executed with LD_PRELOAD=libgkfs_intercept.so (default: True).
timeout: `int`
How much time, in seconds, we should give the process to complete.
If the process does not finish within the timeout, it will be sent
the signal defined by `timeout_signal`.
timeout_signal: `int`
The signal to be sent to the process if `timeout` is not None.
Default value: signal.SIGKILL
Returns
-------
A sh.RunningCommand instance that allows interacting with
the finished process.
"""
logger.debug(f"running bash")
logger.debug(f"cmd: bash -c '{code}'")
logger.debug(f"timeout: {timeout} seconds")
logger.debug(f"timeout_signal: {signal.Signals(timeout_signal).name}")
logger.debug(f"patched env: {self._patched_env}")
# 'sh' raises an exception if the return code is not zero;
# since we'd rather check for return codes explictly, we
# whitelist all exit codes from 1 to 255 as 'ok' using the
# _ok_code argument
return self._cmd('-c',
code,
_env = (self._env if intercept_shell else os.environ),
# _out=sys.stdout,
# _err=sys.stderr,
_timeout=timeout,
_timeout_signal=timeout_signal,
# _ok_code=list(range(0, 256))
def run(self, cmd, *args, timeout=60, timeout_signal=signal.SIGKILL):
"""
Execute a shell command with arguments.
For example, the following snippet:
mountdir = pathlib.Path('/tmp')
file01 = 'file01'
ShellClient().stat('--terse', mountdir / file01)
transforms into:
bash -c 'stat --terse /tmp/file01'
Parameters:
-----------
cmd: `str`
The command to execute.
args: `list`
The list of arguments for the command.
timeout: `number`
How much time, in seconds, we should give the process to complete.
If the process does not finish within the timeout, it will be sent
the signal defined by `timeout_signal`.
timeout_signal: `int`
The signal to be sent to the process if `timeout` is not None.
Default value: signal.SIGKILL
Returns
-------
A ShellCommand instance that allows interacting with the finished
process. Note that ShellCommand wraps sh.RunningCommand and adds s
extra properties to it.
"""
bash_c_args = f"{cmd} {' '.join(str(a) for a in args)}"
logger.debug(f"running bash")
logger.debug(f"cmd: bash -c '{bash_c_args}'")
logger.debug(f"timeout: {timeout} seconds")
logger.debug(f"timeout_signal: {signal.Signals(timeout_signal).name}")
logger.debug(f"patched env:\n{pformat(self._patched_env)}")
# 'sh' raises an exception if the return code is not zero;
# since we'd rather check for return codes explictly, we
# whitelist all exit codes from 1 to 255 as 'ok' using the