Migration to full Thallium

    int c;

    optind = 1; // Reset getopt's internal index for repeated calls.

    while((c = getopt(argc, modified_argv.data(), optstring)) != -1) {

        if(c == -1) {

            break;

        }

        switch(c) {

            case 'H':

    // Each process loops ONLY over its assigned servers

    for(int server = start_server; server < end_server; server++) {

        struct dirent_extended* entries = nullptr;

        long unsigned int n =

        int n =

                gkfs_getsingleserverdir(path.c_str(), &entries, server);

        if(n <= 0) { // Handle empty or error cases

srun -N $NUM_NODES -n $GKFS_FIND_PROCESS --overlap --overcommit --mem=0 --oversubscribe --export=ALL,LD_PRELOAD=${GKFS} $GKFS_FIND $@ -M $GKFS_MNT -S $GKFS_SERVERS

#!/bin/bash

# scripts/aggregate_sfind_results.sh

# Robustly aggregates gfind_results.rank-*.txt files

# Initialize total counters

total_found=0

total_checked=0

# Check if any result files exist

if ! ls gfind_results.rank-*.txt 1> /dev/null 2>&1; then

# Enable nullglob so *.txt doesn't return literal string if no files match

shopt -s nullglob

files=(gfind_results.rank-*.txt)

if [ ${#files[@]} -eq 0 ]; then

    echo "No result files found (gfind_results.rank-*.txt)."

    exit 1

fi

# Loop through all result files

for file in gfind_results.rank-*.txt; do

    # Read the line "MATCHED found/checked" from the file

    # and extract the numbers.

    read -r _ found_str checked_str < "$file"

echo "Found ${#files[@]} result files. Aggregating..."

for file in "${files[@]}"; do

    if [ ! -s "$file" ]; then

         echo "Warning: File $file is empty or missing. Skipping."

         continue

    fi

    # Read the line. Using -r to prevent backslash interpretation.

    if read -r line < "$file"; then

        # Expected format: MATCHED <found>/<checked>

        # Example: MATCHED 123/4567

        # Remove prefix "MATCHED " if present

        if [[ "$line" == MATCHED* ]]; then

            val_str="${line#MATCHED }"

        else

            # Try to handle cases where MATCHED might be missing or different

            val_str="$line" 

        fi

    # Use cut to handle the "found/checked" format

    found=$(echo "$found_str" | cut -d'/' -f1)

    checked=$(echo "$checked_str") # this will be the same as found_str's second part

        # Split by '/'

        # found is everything before /

        found="${val_str%%/*}"

        # checked is everything after /

        checked="${val_str##*/}"

    # Bash arithmetic to add to totals

        # Validate that they are numbers

        if [[ "$found" =~ ^[0-9]+$ ]] && [[ "$checked" =~ ^[0-9]+$ ]]; then

            total_found=$((total_found + found))

            total_checked=$((total_checked + checked))

        else

            echo "Error: Invalid number format in $file: '$line' -> found='$found' checked='$checked'"

            # If set -e is active in parent script, we might want to exit? 

            # Or just warn and continue. Warn is safer for now.

        fi

    else

        echo "Warning: Could not read line from $file"

    fi

done

# Print the final aggregated result

echo "MATCHED ${total_found}/${total_checked}"

# Optional: Clean up the intermediate files

# Uncomment the line below if you want to automatically remove the partial results

rm gfind_results.rank-*.txt

exit 0

gkfs_getsingleserverdir(const char* path, struct dirent_extended** dirp,

                        int server) __attribute__((weak));

extern "C" ssize_t

gkfs_getsingleserverdir_filtered(const char* path,

                                 struct dirent_extended** dirp, int server,

                                 const char* start_key, const char* filter_name,

                                 int64_t filter_size, int64_t filter_ctime,

                                 char** last_key_out, uint64_t* total_checked_out) __attribute__((weak));

/* PFIND OPTIONS EXTENDED */

typedef struct {

    string workdir;

    bool just_count = false;

    bool print_by_process = false;

    string results_dir;

    bool server_side = false;

    int stonewall_timer = 0;

    bool print_rates = false;

    string timestamp_file;

pfind_print_help(const pfind_options_t* res) {

    printf("pfind \nSynopsis:\n"

           "pfind <workdir> [-newer <timestamp file>] [-size <size>c] [-name "

           "<substr>] [-regex <regex>] [-S <numserver>] [-M <mountdir>]\n"

           "<substr>] [-regex <regex>] [-S <numserver>] [-M <mountdir>] [-C] [-P] [--server-side]\n"

           "\tworkdir = \"%s\"\n"

           "\t-newer = \"%s\"\n"

           "\t-name|-regex = \"%s\"\n"

           "\t-M: mountdir = \"%s\"\n"

           "Optional flags\n"

           "\t-h: prints the help\n"

           "\t--help: prints the help without initializing MPI\n",

           "\t--help: prints the help without initializing MPI\n"

           "\t-C: just count\n"

           "\t-P: print by process\n"

           "\t--server-side: enable server-side filtering\n",

           res->workdir.c_str(), res->timestamp_file.c_str(),

           res->name_pattern.c_str(), res->num_servers, res->mountdir.c_str());

}

            modified_argv[i][0] = 0;

            modified_argv[i + 1][0] = 0;

            ++i;

        } else if(strcmp(argv[i], "--server-side") == 0) {

            res->server_side = true;

            modified_argv[i][0] = 0;

        } else if(res->workdir.empty() && argv[i][0] != '-') {

            res->workdir = argv[i];

            modified_argv[i][0] = 0;

    ThreadData* data = static_cast<ThreadData*>(arg);

    unsigned long long local_found = 0;

    unsigned long long local_checked = 0;

    const size_t max_retries = 3;

    while(true) {

        int server_id = -1;

        if(server_id == -1)

            break;

        // Check if we should use server-side filtering

        bool use_server_filter = data->opt->server_side;

        if(use_server_filter && !gkfs_getsingleserverdir_filtered) {

             cerr << "Warning: --server-side requested but server-side filtering function is not available. Falling back to client-side." << endl;

             use_server_filter = false;

        }

        if(use_server_filter) {

            char* last_key = nullptr;

            while(true) {

                struct dirent_extended* entries = nullptr;

                char* new_last_key = nullptr;

                int64_t f_size = (data->opt->size ==

                                  std::numeric_limits<uint64_t>::max())

                                         ? -1

                                         : (int64_t) data->opt->size;

                int64_t f_ctime = (runtime.ctime_min == 0)

                                          ? -1

                                          : (int64_t) runtime.ctime_min;

                ssize_t n = -1;

                uint64_t server_checked_count = 0;

                for(size_t i = 0; i < max_retries; ++i) {

                    n = gkfs_getsingleserverdir_filtered(

                            data->workdir->c_str(), &entries, server_id,

                            last_key ? last_key : "",

                            data->opt->name_pattern.c_str(), f_size, f_ctime,

                            &new_last_key, &server_checked_count);

                    if(n >= 0)

                        break;

                    // simple retry delay could be added here

                }

                if(n < 0) {

                    cerr << "Warning: Rank " << sfind_rank << " Thread "

                         << data->thread_id << " received error from server "

                         << server_id << " during filtered scan." << endl;

                    if(entries)

                        free(entries);

                    if(last_key)

                        free(last_key);

                    if(new_last_key)

                        free(new_last_key);

                    break; // Skip this server

                }

                local_checked += server_checked_count;

                if(n > 0 && entries) {

                    char* ptr = reinterpret_cast<char*>(entries);

                    int bytes_processed = 0;

                    while(bytes_processed < n) {

                        struct dirent_extended* temp =

                                reinterpret_cast<struct dirent_extended*>(ptr);

                        if(temp->d_reclen == 0)

                            break;

                        local_found++;

                        // Print entry if not just counting

                        if(!data->opt->just_count) {

                            string p_path = (data->workdir->back() == '/') ? *data->workdir : *data->workdir + "/";

                            p_path += temp->d_name;

                            cout << data->opt->mountdir << p_path << endl;

                        }

                        bytes_processed += temp->d_reclen;

                        ptr += temp->d_reclen;

                    }

                    free(entries);

                } else {

                    if(entries)

                        free(entries);

                }

                if(last_key)

                    free(last_key);

                last_key = new_last_key;

                // If last_key is empty, we are done

                if(last_key == nullptr || last_key[0] == '\0') {

                    if(last_key)

                        free(last_key);

                    break;

                }

            }

        } else {

            // Fallback to client-side filtering (get all)

            struct dirent_extended* entries = nullptr;

            long n = gkfs_getsingleserverdir(data->workdir->c_str(), &entries,

                                             server_id);

                if(temp->d_type != 1) {

                    bool timeOK = data->opt->timestamp_file.empty() ||

                                  ((uint64_t) temp->ctime >= runtime.ctime_min);

                bool sizeOK = (data->opt->size ==

                    bool sizeOK =

                            (data->opt->size ==

                                     std::numeric_limits<uint64_t>::max() ||

                             temp->size == data->opt->size);

                bool nameOK = data->opt->name_pattern.empty() ||

                    bool nameOK =

                            data->opt->name_pattern.empty() ||

                            regex_search(temp->d_name, data->opt->name_regex);

                    if(timeOK && sizeOK && nameOK)

            }

            free(entries);

        }

    }

    // Atomically add local results to the global counters

    data->total_found->fetch_add(local_found);

extern "C" {

#include <fcntl.h>

#include <stdlib.h>

#include <unistd.h>

}

using namespace std;

    res = gkfs_end();

    cout << "End result " << res << endl;

    return 0;

}

/*

  Copyright 2018-2025, Barcelona Supercomputing Center (BSC), Spain

  Copyright 2015-2025, Johannes Gutenberg Universitaet Mainz, Germany

  This software was partially supported by the

  EC H2020 funded project NEXTGenIO (Project ID: 671951, www.nextgenio.eu).

  This software was partially supported by the

  ADA-FS project under the SPPEXA project funded by the DFG.

  This software was partially supported by the

  the European Union’s Horizon 2020 JTI-EuroHPC research and

  innovation programme, by the project ADMIRE (Project ID: 956748,

  admire-eurohpc.eu)

  This project was partially promoted by the Ministry for Digital Transformation

  and the Civil Service, within the framework of the Recovery,

  Transformation and Resilience Plan - Funded by the European Union

  -NextGenerationEU.

  This file is part of GekkoFS' POSIX interface.

  GekkoFS' POSIX interface is free software: you can redistribute it and/or

  modify it under the terms of the GNU Lesser General Public License as

  published by the Free Software Foundation, either version 3 of the License,

  or (at your option) any later version.

  GekkoFS' POSIX interface is distributed in the hope that it will be useful,

  but WITHOUT ANY WARRANTY; without even the implied warranty of

  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the

  GNU Lesser General Public License for more details.

  You should have received a copy of the GNU Lesser General Public License

  along with GekkoFS' POSIX interface.  If not, see

  <https://www.gnu.org/licenses/>.

  SPDX-License-Identifier: LGPL-3.0-or-later

*/

#ifndef GEKKOFS_CLIENT_FORWARD_MNGMNT_HPP

#define GEKKOFS_CLIENT_FORWARD_MNGMNT_HPP

namespace gkfs::rpc {

bool

forward_get_fs_config();

} // namespace gkfs::rpc

#endif // GEKKOFS_CLIENT_FORWARD_MNGMNT_HPP