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dep_scripts: Patches skipped

Patches are not being applied when running dl_dep.sh to download dependencies (notice the Skipped patch message in the log below:

Destination path is set to  "/home/amiranda/gekkofs_deps/git"
Profile name: default
Profile version: latest
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Cloned 'https://github.com/francielizanon/agios.git' to 'agios' with commit '[c26a6544200f823ebb8f890dd94e653d148bf226]' and flags '-b development'
Cloned 'https://github.com/radix-io/bmi/' to 'bmi' with commit '[6ea0b78fce1b964e45102828cdd05df7040a94c8]' and flags ''
Cloned 'https://github.com/pmem/syscall_intercept.git' to 'syscall_intercept' with commit '[f7cebb7b7e7512a19b78a31ce236ad6ca22636dd]' and flags ''

Skipped patch 'include/libsyscall_intercept_hook_point.h'.
Skipped patch 'src/intercept.c'.
Skipped patch 'test/test_clone_thread_preload.c'.

Downloaded 'https://github.com/lz4/lz4/archive/v1.8.0.tar.gz' to 'lz4'
Downloaded 'https://github.com/google/snappy/archive/1.1.7.tar.gz' to 'snappy'
Downloaded 'https://github.com/intel/opa-psm2/archive/PSM2_11.2.86.tar.gz' to 'psm2'
Cloned 'https://github.com/HowardHinnant/date.git' to 'date' with commit '[e7e1482087f58913b80a20b04d5c58d9d6d90155]' and flags ''
Downloaded 'https://sourceforge.net/projects/bzip2/files/bzip2-1.0.6.tar.gz' to 'bzip2'
Downloaded 'https://github.com/pmodels/argobots/archive/v1.0rc1.tar.gz' to 'argobots'
Cloned 'https://xgitlab.cels.anl.gov/sds/margo.git' to 'margo' with commit '[v0.6.3]' and flags ''
Downloaded 'https://github.com/aquynh/capstone/archive/4.0.1.tar.gz' to 'capstone'
Downloaded 'https://github.com/facebook/rocksdb/archive/v6.2.2.tar.gz' to 'rocksdb'
Downloaded 'https://github.com/facebook/zstd/archive/v1.3.2.tar.gz' to 'zstd'
Downloaded 'https://github.com/facebook/rocksdb/archive/v6.11.4.tar.gz' to 'rocksdb:experimental'
Cloned 'https://github.com/ofiwg/libfabric.git' to 'libfabric' with commit '[HEAD]' and flags '-b v1.8.1'
Cloned 'https://github.com/mercury-hpc/mercury' to 'mercury' with commit '[41caa143a07ed179a3149cac4af0dc7aa3f946fd]' and flags '--recurse-submodules'
Cloned 'https://github.com/ofiwg/libfabric.git' to 'libfabric:experimental' with commit '[HEAD]' and flags '-b v1.9.1'
Cloned 'https://github.com/ofiwg/libfabric.git' to 'libfabric:verbs' with commit '[HEAD]' and flags '-b v1.7.2'
Done