Restructuring directory hierarchy of the project + re-adding header files to CMake sources.

- Previously the directory hierarchy was not clear regarding to which
  file belong to which part of the project (client or daemon).
  Further, we will have other clients in the future (such as Fuse).
- CMake files now differentiate between include dirs for all targets
  and target specific ones.
- Removed duplicate -pg flag.
- Not listing header files when adding executables or libraries
  is considered bad practice. Note that include_directories() is adding
  include paths to the code while adding all files used for executables
  and libraries provide the context which files belong to each binary.
  When only include_directories() is set, CMake assumes that all files
  belong to a binary (which is not necessarily true). As a result,
  some IDEs may break as the do not support this assumption.

  In general we should almost always favor explicitness over implicitness.